Phenotype-genotype association analysis results for SNPs in Alstrom syndrome 1 (ALMS1)

Each thumbnail image below illustrates the results of multiple phenotype/genotype association comparisons between echocardiographic phenotypes in Framingham Heart Study Offspring subjects and their SNP genotypes. The 8 x 18 grid on the left illustrates associations analyzed with a variety of samples, covariates, and inheritance models. The 6 x 6 grid on the right illustrates gene-environment interactions between six phenotypes and six environmental factors (covariates), using the general inheritance model.

The color of a cell indicates the strength of the association (see the color key) based on the P-value of the comparison. Grids are sorted by physical map position in the UCSC Golden Path hg16 freeze.

Click on a phenotype-genotype association grid to view detailed data and graphs for that SNP.

PGA Grid
phenotype- genotype association	gene- environment interaction	SNP	Position	Type	Batch	HW Equilibrium
		WIPGA_03_500	chr: 73,626,475		7	pass
		WIPGA_03_501	chr: 73,626,505		7	pass
		WIPGA_03_504	chr: 73,650,207		7	pass
		WIPGA_03_509	chr: 73,653,154		7	pass
		WIPGA_03_510	chr: 73,653,818		7	pass
		WIPGA_03_511	chr: 73,653,978		7	pass
		WIPGA_03_512	chr: 73,654,404		7	pass
		WIPGA_03_513	chr: 73,654,494		7	pass
		WIPGA_03_514	chr: 73,654,528		7	pass
		WIPGA_03_515	chr: 73,654,944		7	pass
		WIPGA_03_517	chr: 73,655,046		7	pass
		WIPGA_03_519	chr: 73,691,348		7	pass
		WIPGA_03_520	chr: 73,691,641		7	pass
		WIPGA_03_521	chr: 73,692,105		7	pass
		WIPGA_03_534	chr: 73,803,076		7	pass

Color Key:

no P-value

0.05≤P≤ 1.0

0.01≤P<0.05

0.001≤P<0.01

0.0001≤P<0.001

P < 0.0001