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Project 5 >
Association analyses >
gene AGTR1
Phenotype-genotype association analysis results for SNPs in
Angiotensin receptor, type 1 (AGTR1)
Each thumbnail image below illustrates the results of multiple
phenotype/genotype association comparisons
between echocardiographic phenotypes
in Framingham Heart Study Offspring subjects
and their SNP genotypes. The 8 x 18 grid on the left illustrates
associations analyzed with a variety of samples,
covariates, and inheritance models. The 6 x 6 grid on the right
illustrates gene-environment interactions between six phenotypes and
six environmental factors (covariates), using the general inheritance
model.
The color of a cell indicates the strength of the association (see the
color key) based on the P-value
of the comparison. Grids are sorted by physical map position in the
UCSC Golden Path
hg16 freeze.
Click on a phenotype-genotype association grid
to view detailed data and graphs for that SNP.
| PGA Grid |
|
|---|
| phenotype- genotype association |
gene- environment interaction |
SNP |
Position |
Type |
Batch |
HW Equilibrium |
|---|
 |
|
rs454530 |
chr: 149,721,566 |
5' of transcribed region |
9 | pass |
 |
 |
rs275651 |
chr3: 149,735,796 |
5' of transcribed region |
3 | pass |
 |
 |
rs2276736 |
chr: 149,746,782 |
|
5 | pass |
 |
 |
rs2640543 |
chr: 149,753,278 |
|
5 | pass |
 |
 |
hCV3187744 |
chr3: 149,755,893 |
intronic |
3 | pass |
 |
 |
hCV2950427 |
chr3: 149,756,662 |
intronic |
2 | pass |
 |
 |
hCV3187745 |
chr3: 149,757,217 |
intronic |
2 | pass |
 |
 |
rs1492100 |
chr3: 149,758,336 |
intronic |
1 | pass |
 |
 |
hCV3187747 |
chr: 149,759,100 |
intronic |
5 | pass |
 |
|
rs6766771 |
chr: 149,765,146 |
|
9 | pass |
 |
|
rs2675511 |
chr: 149,766,527 |
intronic |
9 | pass |
 |
 |
rs389566 |
chr3: 149,767,291 |
intronic |
3 | pass |
 |
 |
rs388915 |
chr3: 149,768,665 |
intronic |
1 | pass |
 |
 |
rs2638355 |
chr: 149,769,985 |
|
5 | pass |
 |
 |
rs385338 |
chr3: 149,770,065 |
intronic |
1 | pass |
 |
 |
rs275649 |
chr3: 149,774,235 |
intronic |
1 | pass |
 |
|
rs6801836 |
chr: 149,776,446 |
|
9 | pass |
 |
 |
rs1800766 |
chr3: 149,778,551 |
intronic |
1 | pass |
 |
 |
G2409a2 |
chr: 149,780,304 |
silent |
5 | pass |
 |
 |
rs5182 |
chr3: 149,780,304 |
silent |
2 | pass |
 |
|
rs5183 |
chr: 149,780,793 |
silent |
9 | pass |
 |
 |
rs5186 |
chr3: 149,780,897 |
3' UTR |
1 | pass |
 |
 |
hCV3187716 |
chr3: 149,780,897 |
3' UTR |
3 | pass |
 |
 |
G2409e6 |
chr: 149,780,897 |
|
5 | pass |
 |
 |
rs2055049 |
chr: 149,784,191 |
|
5 | pass |
 |
|
rs275645 |
chr: 149,785,363 |
|
9 | pass |
 |
 |
hCV26916176 |
chr: 149,788,957 |
|
5 | pass |
 |
 |
rs2261950 |
chr: 149,789,174 |
|
5 | pass |
 |
 |
hCV3134761 |
chr: 149,789,655 |
|
5 | pass |
| Color Key: |
no P-value |
0.05≤P≤ 1.0 |
0.01≤P<0.05 |
0.001≤P<0.01 |
0.0001≤P<0.001 |
P < 0.0001 |
|
