Phenotype-genotype association analysis results for SNPs in Angiotensinogen (AGT)

Each thumbnail image below illustrates the results of multiple phenotype/genotype association comparisons between echocardiographic phenotypes in Framingham Heart Study Offspring subjects and their SNP genotypes. The 8 x 18 grid on the left illustrates associations analyzed with a variety of samples, covariates, and inheritance models. The 6 x 6 grid on the right illustrates gene-environment interactions between six phenotypes and six environmental factors (covariates), using the general inheritance model.

The color of a cell indicates the strength of the association (see the color key) based on the P-value of the comparison. Grids are sorted by physical map position in the UCSC Golden Path hg16 freeze.

Click on a phenotype-genotype association grid to view detailed data and graphs for that SNP.

PGA Grid
phenotype- genotype association	gene- environment interaction	SNP	Position	Type	Batch	HW Equilibrium
		rs1410143	chr: 227,863,392		5	pass
		rs3789662	chr: 227,863,878		5	pass
		rs2478534	chr: 227,863,992		5	pass
		hCV3180405_F	chr: 227,864,852		9	pass
		rs7366832	chr: 227,871,070		9	pass
		rs7536290_F	chr: 227,871,707		9	borderline
		rs11122574	chr: 227,872,813		9	pass
		rs2067853	chr: 227,873,263		5	pass
		rs7079	chr1: 227,873,336	3' UTR	2	pass
		G9948a6	chr1: 227,874,826	intronic	3	pass
		rs1926723	chr1: 227,875,101	intronic, 3' splice site	2	pass
		rs2478522	chr1: 227,876,692	silent	2	pass
		rs2493132	chr: 227,878,562		9	pass
		rs3789669_F	chr: 227,878,638		9	borderline
		rs3789671	chr: 227,878,805		5	pass
		rs2478544_F	chr: 227,879,201		9	pass
		G9948a1	chr1: 227,880,799	missense	1	pass
		rs699	chr1: 227,880,799	missense	2	pass
		G9948a0	chr1: 227,880,982	missense	1	pass
		rs4762	chr1: 227,880,982	missense	2	pass
		rs5051	chr1: 227,884,877	5' of transcribed region	2	pass
		rs5050	chr: 227,884,891		5	pass
		rs5046	chr: 227,885,403		5	pass
		rs2493136	chr: 227,886,541		5	pass
		rs1854054_R	chr: 227,893,671		9	borderline
		rs7365395_F	chr: 227,893,756		9	pass
		rs1326886	chr1: 227,894,765	5' of transcribed region	2	pass

Color Key:

no P-value

0.05≤P≤ 1.0

0.01≤P<0.05

0.001≤P<0.01

0.0001≤P<0.001

P < 0.0001