SNPs Identified in AGL

Project 5 > SNP Discovery and Genotyping > Candidate Gene List > AGL Main Page > SNPs Identified in AGL

Validated SNPs Identified by Resequencing in AGL

Reference cDNA sequence (GenBank): NM_000028

Whitehead Internal ID Position in cDNA NM_000028 UCSC Coordinates Polymorphism Type Flanking Sequence Minor Allele Frequency in Caucasians Alternate Amino Acids Alternate Nucleotides

WIPGA_03_147 469 chr1:99779512 5' UTR view A/G

WIPGA_03_148 chr1:99790614 Intronic view T/C

WIPGA_03_149 1164 chr1:99798900 Mis-sense view Q229R A/G

G4973a9 1372 chr1:99799284 Silent view L298L T/C

G4973a10 chr1:99803148 Intronic view A/G

G4973a12 1633 chr1:99803705 Mis-sense view K385N G/T

G4973a13 1638 chr1:99803710 Mis-sense view R387Q G/A

G4973a14 chr1:99803750 Intronic view T/C

WIPGA_03_150 chr1:99805150 Intronic view C/T

G4973a15 chr1:99805996 Intronic view T/A

G4973a16 chr1:99806029 Intronic view G/A

G4973a17 chr1:99806076 Intronic view A/G

G4973a18 chr1:99808332 Intronic view C/G

G4973a19 chr1:99813240 Intronic view C/T

G4973a20 chr1:99813306 Intronic view G/A

WIPGA_03_152 chr1:99816598 Intronic view A/G

WIPGA_03_153 chr1:99819681 Intronic view A/C

WIPGA_03_154 chr1:99819964 Intronic view A/G

WIPGA_03_155 chr1:99820064 Intronic view T/A

WIPGA_03_158 3677 chr1:99821026 Missense view P1067S C/T

WIPGA_03_159 chr1:99821123 Intronic view A/G

WIPGA_03_162 3909 chr1:99829183 Mis-sense view I1144N T/A

G4973a21 chr1:99831305 Intronic view T/C

G4973a22 chr1:99839371 Intronic view G/A

G4973a23 chr1:99839379 Intronic view T/A

G4973a25 4327 chr1:99840896 Silent view A1283A T/C

WIPGA_03_163 chr1:99843779 Intronic view T/A

G4973a26 4692 chr1:99843920 Mis-sense view E1405G A/G

Whitehead Internal ID	Position in cDNA NM_000028	UCSC Coordinates	Polymorphism Type	Flanking Sequence	Alternate Amino Acids	Alternate Nucleotides
WIPGA_03_147	469	chr1:99779512	5' UTR	view		A/G
WIPGA_03_148		chr1:99790614	Intronic	view		T/C
WIPGA_03_149	1164	chr1:99798900	Mis-sense	view	Q229R	A/G
G4973a9	1372	chr1:99799284	Silent	view	L298L	T/C
G4973a10		chr1:99803148	Intronic	view		A/G
G4973a12	1633	chr1:99803705	Mis-sense	view	K385N	G/T
G4973a13	1638	chr1:99803710	Mis-sense	view	R387Q	G/A
G4973a14		chr1:99803750	Intronic	view		T/C
WIPGA_03_150		chr1:99805150	Intronic	view		C/T
G4973a15		chr1:99805996	Intronic	view		T/A
G4973a16		chr1:99806029	Intronic	view		G/A
G4973a17		chr1:99806076	Intronic	view		A/G
G4973a18		chr1:99808332	Intronic	view		C/G
G4973a19		chr1:99813240	Intronic	view		C/T
G4973a20		chr1:99813306	Intronic	view		G/A
WIPGA_03_152		chr1:99816598	Intronic	view		A/G
WIPGA_03_153		chr1:99819681	Intronic	view		A/C
WIPGA_03_154		chr1:99819964	Intronic	view		A/G
WIPGA_03_155		chr1:99820064	Intronic	view		T/A
WIPGA_03_158	3677	chr1:99821026	Missense	view	P1067S	C/T
WIPGA_03_159		chr1:99821123	Intronic	view		A/G
WIPGA_03_162	3909	chr1:99829183	Mis-sense	view	I1144N	T/A
G4973a21		chr1:99831305	Intronic	view		T/C
G4973a22		chr1:99839371	Intronic	view		G/A
G4973a23		chr1:99839379	Intronic	view		T/A
G4973a25	4327	chr1:99840896	Silent	view	A1283A	T/C
WIPGA_03_163		chr1:99843779	Intronic	view		T/A
G4973a26	4692	chr1:99843920	Mis-sense	view	E1405G	A/G

Download a spreadsheet containing this information for all CardioGenomics SNPS which were identified by resequencing of candidate genes:

Page last modified September 14, 2005.

Project 5 > SNP Discovery and Genotyping > Candidate Gene List > AGL Main Page > SNPs Identified in AGL