Project 5 > SNP Discovery and Genotyping > Candidate Gene List > AGT Main Page > SNPs Genotyped in AGT

SNPs Genotyped for LD Determination in AGT

Reference cDNA sequence (GenBank):   NM_000029

Download raw genotyping data for AGT

SNP ID alias dbSNP UCSC Coordinates Results Minor Allele Frequency in Caucasians Polymorphism Type Alternate Nucleotides Mendel Errors Hwpval % geno Primer Information Flanking Sequence
hCV26885258     chr1:Orientation Unknown GOOD 0.33 Not Found A/G   0.91 98.9 view view
hCV502837     chr1:Orientation Unknown GOOD 0.26 Not Found G/T   0.93 84.9 view view
rs1536589   rs1536589 chr1:227858142 MONO   3' of transcribed region A/G   0.92 86.6 view view
rs1410144   rs1410144 chr1:227863353 GOOD 0.26 3' of transcribed region A/C   0.72 97.8 view view
rs1410143   rs1410143 chr1:227863392 GOOD 0.06 3' of transcribed region C/T   0.99 93.5 view view
rs3789661   rs3789661 chr1:227863765 GOOD 0.20 3' of transcribed region C/T 1 0.47 100 view view
rs2493125   rs2493125 chr1:227863770 GOOD 0.06 3' of transcribed region A/C   0.66 95.7 view view
rs3789662   rs3789662 chr1:227863878 GOOD 0.20 3' of transcribed region C/T   0.89 100 view view
rs2478534   rs2478534 chr1:227863992 GOOD 0.47 3' of transcribed region G/T   0.61 96.8 view view
hCV3180405     chr1:227864852 GOOD 0.17 3' of transcribed region C/T   0.87 97.8 view view
hCV3180410     chr1:227868932 GOOD 0.19 3' of transcribed region C/T   0.99 87.1 view view
rs7366832   rs7366832 chr1:227871070 GOOD 0.09 3' of transcribed region A/G   0.047 100 view view
rs7536290   rs7536290 chr1:227871707 GOOD 0.12 3' of transcribed region C/T   1 100 view view
rs11122573   rs11122573 chr1:227872185 GOOD 0.08 3' of transcribed region G/A   0.079 100 view view
rs943581   rs943581 chr1:227872219 GOOD 0.03 3' of transcribed region A/G   0.97 83.5 view view
rs10864771   rs10864771 chr1:227872677 GOOD 0.08 3' of transcribed region C/A   0.079 98.9 view view
rs11122574   rs11122574 chr1:227872813 GOOD 0.07 3' of transcribed region G/A   0.348 90.3 view view
rs11568046   rs11568046 chr1:227873120 GOOD 0.01 3' of transcribed region T/C   1 100 view view
rs2067853   rs2067853 chr1:227873263 GOOD 0.37 3' of transcribed region C/T   0.99 93.5 view view
rs7079   rs7079 chr1:227873336 GOOD 0.38 3' UTR C/A   0.88 94.6 view view
rs5044   rs5044 chr1:227873469 MONO   3' UTR T/G   0.91 92.7 view view
rs1803104   rs1803104 chr1:227873576 MONO   3' UTR A/G   0.91 94.8 view view
rs15022   rs15022 chr1:227873704 MONO   3' UTR G/T   0.91 96.9 view view
rs1803103   rs1803103 chr1:227873705 MONO   3' UTR G/T   0.91 96.9 view view
rs11684   rs11684 chr1:227873708 MONO   3' UTR C/T   0.91 96.9 view view
rs4753   rs4753 chr1:227873734 MONO   3' UTR C/G   0.92 85.4 view view
rs5042   rs5042 chr1:227873852 MONO   3' UTR C/T   0.93 77.1 view view
rs11568045   rs11568045 chr1:227874488 MONO   Intronic C/A   1 100 view view
G9948a6     chr1:227874826 GOOD 0.09 Intronic G/A   0.17 86 view view
rs1926723   rs1926723 chr1:227875101 GOOD 0.07 "Intronic, 3' Splice Site" A/G 1 0.67 82.8 view view
rs1926722   rs1926722 chr1:227875202 GOOD 0.08 Intronic G/T   0.14 77.4 view view
rs2478523   rs2478523 chr1:227876514 GOOD 0.25 Intronic C/T   0.37 95.7 view view
rs2478522   rs2478522 chr1:227876692 GOOD 0.09 Silent A/G   0.89 87.1 view view
rs2493131   rs2493131 chr1:227878510 GOOD 0.04 Intronic A/G   0.97 84.5 view view
rs2493132   rs2493132 chr1:227878562 GOOD 0.29 Intronic A/G   1 98.9 view view
rs3789669   rs3789669 chr1:227878638 GOOD 0.12 Intronic C/T 1 0.035 95.7 view view
rs3789670   rs3789670 chr1:227878719 GOOD 0.07 Intronic A/G   0.96 100 view view
rs3789671   rs3789671 chr1:227878805 GOOD 0.17 Intronic A/C   0.35 100 view view
rs2478545   rs2478545 chr1:227879126 GOOD 0.18 Intronic C/T   0.86 94.6 view view
rs2478544   rs2478544 chr1:227879201 GOOD 0.17 Intronic C/G   0.55 93.5 view view
rs2493133   rs2493133 chr1:227879278 GOOD 0.36 Intronic A/G   0.72 94.6 view view
rs2478543   rs2478543 chr1:227879315 GOOD 0.38 Intronic A/G   0.88 95.7 view view
rs6687360   rs6687360 chr1:227879997 GOOD 0.32 Intronic A/G   1 100 view view
rs7543316   rs7543316 chr1:227880390 MONO   Intronic G/T   1 98.9 view view
G9948a1   rs699 chr1:227880799 GOOD 0.37 Missense C/T   0.95 95.7 view view
rs699 G9948a1 rs699 chr1:227880799 GOOD 0.41 Missense C/T   0.9 86 view view
rs5041   rs5041 chr1:227880871 MONO   Missense T/G   0.91 94.8 view view
rs4762   rs4762 chr1:227880982 GOOD 0.12 Missense c/t   0.93 100 view view
rs5040   rs5040 chr1:227881272 MONO   Silent C/T   0.91 92.7 view view
rs5039   rs5039 chr1:227881445 MONO   Missense C/T   0.91 92.7 view view
rs1326883   rs1326883 chr1:227882691 GOOD 0.05 Intronic G/T   0.99 80.6 view view
rs2493134   rs2493134 chr1:227884364 GOOD 0.38 Intronic A/G   0.79 100 view view
rs3827750   rs3827750 chr1:227884462 GOOD 0.09 Intronic A/G   0.92 96.8 view view
rs3789678   rs3789678 chr1:227884487 GOOD 0.09 Intronic A/G   0.93 100 view view
rs2148582   rs2148582 chr1:227884804 GOOD 0.36 Intronic C/T   0.84 96.8 view view
rs5051   rs5051 chr1:227884877 GOOD 0.33 5' of transcribed region A/G 1 0.77 80.6 view view
rs5050   rs5050 chr1:227884891 GOOD 0.14 5' of transcribed region C/A   0.96 97.8 view view
rs5046   rs5046 chr1:227885403 GOOD 0.09 5' of transcribed region C/T   0.93 100 view view
rs2071406   rs2071406 chr1:227885646 GOOD 0.03 5' of transcribed region C/T   0.99 82.5 view view
rs2071405   rs2071405 chr1:227885663 GOOD 0.09 5' of transcribed region A/G   0.92 98.9 view view
rs2493136   rs2493136 chr1:227886541 GOOD 0.38 5' of transcribed region A/G   0.81 97.8 view view
rs6683321   rs6683321 chr1:227886633 GOOD 0.14 5' of transcribed region C/T   1 100 view view
rs11568014   rs11568014 chr1:227886813 MONO   5' of transcribed region T/C   1 100 view view
rs11568048   rs11568048 chr1:227886920 GOOD 0.02 5' of transcribed region C/A   1 100 view view
rs2493137   rs2493137 chr1:227887121 GOOD 0.30 5' of transcribed region G/A   0.97 93.5 view view
rs7418889   rs7418889 chr1:227889025 MONO   5' of transcribed region A/G   1 100 view view
rs12131673   rs12131673 chr1:227889607 MONO   5' of transcribed region C/T   1 98.9 view view
rs12131716   rs12131716 chr1:227889710 MONO   5' of transcribed region C/T   1 96.8 view view
rs11585925   rs11585925 chr1:227890402 GOOD 0.06 5' of transcribed region C/G   1 93.5 view view
rs6666488   rs6666488 chr1:227891837 GOOD 0.10 5' of transcribed region C/T   0.688 98.9 view view
rs10864773   rs10864773 chr1:227892001 MONO   5' of transcribed region A/G   1 95.7 view view
rs1854053   rs1854053 chr1:227893083 GOOD 0.05 5' of transcribed region A/G   1 100 view view
rs12083907   rs12083907 chr1:227893144 MONO   5' of transcribed region C/T   1 100 view view
rs1854054   rs1854054 chr1:227893671 GOOD 0.09 5' of transcribed region C/T   1 100 view view
rs7365395   rs7365395 chr1:227893756 GOOD 0.09 5' of transcribed region G/T   1 96.7 view view
rs1326885   rs1326885 chr1:227894578 GOOD 0.05 5' of transcribed region A/G   0.97 79.4 view view
rs1326886   rs1326886 chr1:227894765 GOOD 0.13 5' of transcribed region C/T 1 0.082 84.5 view view

Download a spreadsheet containing this information for all CardioGenomics SNPs that have undergone genotyping:

Page last modified September 14, 2005.

Project 5 > SNP Discovery and Genotyping > Candidate Gene List > AGT Main Page > SNPs Genotyped in AGT