Project 5 > SNP Discovery and Genotyping > Candidate Gene List > AGTR1 Main Page > SNPs Genotyped in AGTR1

SNPs Genotyped for LD Determination in AGTR1

Reference cDNA sequence (GenBank):   NM_000685

Download raw genotyping data for AGTR1

SNP ID alias dbSNP UCSC Coordinates Results Minor Allele Frequency in Caucasians Polymorphism Type Alternate Nucleotides Mendel Errors Hwpval % geno Primer Information Flanking Sequence
rs2201153   rs2201153 chr3:149721080 MONO   5' of transcribed region A/G   0.91 91.8 view view
rs454530   rs454530 chr3:149721566 GOOD 0.24 5' of transcribed region A/G   0.93 90.3 view view
hCV3134785   rs2638359 chr3:149727292 GOOD 0.24 5' of transcribed region A/T   0.92 97.8 view view
hCV3134784   rs2638358 chr3:149727446 GOOD 0.23 5' of transcribed region C/T   0.86 92.5 view view
hCV1202359   rs2933251 chr3:149727708 GOOD 0.23 5' of transcribed region G/T   0.95 92.5 view view
hCV3134782   rs2934079 chr3:149727955 GOOD 0.22 5' of transcribed region C/T   0.98 84.9 view view
rs4317055   rs4317055 chr3:149731575 MONO   5' of transcribed region C/T   1 100 view view
rs6780037   rs6780037 chr3:149731644 MONO   5' of transcribed region A/G   1 100 view view
rs1492079   rs1492079 chr3:149732042 MONO   5' of transcribed region A/G   0.91 91.8 view view
hCV3187732   rs409742 chr3:149733274 GOOD 0.23 5' of transcribed region A/G   0.93 95.7 view view
rs1800765   rs1800765 chr3:149735180 GOOD 0.04 5' of transcribed region C/G   0.93 86 view view
rs275651   rs275651 chr3:149735796 MONO   5' of transcribed region A/T   0.91 87.3 view view
rs1492078   rs1492078 chr3:149736086 GOOD 0.36 5' of transcribed region C/T   0.7 90.3 view view
rs275653   rs275653 chr3:149736454 GOOD 0.19 5' of transcribed region A/G   0.99 86 view view
rs2933249   rs2933249 chr3:149737429 GOOD 0.24 Intronic A/G   0.96 100 view view
rs2640538   rs2640538 chr3:149737691 GOOD 0.22 Intronic T/C   0.9 95.7 view view
rs2640539   rs2640539 chr3:149737951 GOOD 0.24 Intronic C/G   0.96 100 view view
rs3772633   rs3772633 chr3:149739077 GOOD 0.17 Intronic C/T   0.92 96.8 view view
rs770635   rs770635 chr3:149739271 MONO   Intronic C/G   0.91 94.6 view view
rs2638362   rs2638362 chr3:149741425 GOOD 0.36 Intronic C/T   0.94 97.8 view view
rs7622069   rs7622069 chr3:149742795 GOOD 0.34 Intronic C/G   0.637 93.4 view view
rs2131127   rs2131127 chr3:149745052 GOOD 0.32 Intronic A/G   0.69 100 view view
rs1964102   rs1964102 chr3:149745865 GOOD 0.30 Intronic A/T   0.82 83.9 view view
rs2640541   rs2640541 chr3:149746000 GOOD 0.19 Intronic A/G   1 100 view view
hCV11812713     chr3:149746287 GOOD 0.43 Intronic A/G   0.75 98.9 view view
rs7612069   rs7612069 chr3:149746539 MONO   Intronic A/G   1 100 view view
rs2276736   rs2276736 chr3:149746782 GOOD 0.32 Intronic A/G   0.69 100 view view
rs2276735   rs2276735 chr3:149746897 GOOD 0.32 Intronic A/G   0.69 100 view view
rs7634874   rs7634874 chr3:149747106 GOOD 0.05 Intronic A/G   1 97.8 view view
rs3772630   rs3772630 chr3:149747381 GOOD 0.32 Intronic C/T   0.69 100 view view
rs3821499   rs3821499 chr3:149748040 GOOD 0.32 Intronic G/T   0.69 100 view view
rs3772628   rs3772628 chr3:149748251 GOOD 0.32 Intronic G/T   0.69 100 view view
rs2640542   rs2640542 chr3:149748834 MONO   Intronic A/C   1 100 view view
rs2638360   rs2638360 chr3:149749265 GOOD 0.17 Intronic A/G   0.27 77.4 view view
rs2739504   rs2739504 chr3:149749579 GOOD 0.48 Intronic A/G   1 89 view view
rs2639360   rs2639360 chr3:149750735 MONO   Intronic A/C   1 98.9 view view
rs3772627   rs3772627 chr3:149751163 GOOD 0.32 Intronic A/G   0.69 100 view view
rs931490   rs931490 chr3:149751676 GOOD 0.22 Intronic A/G   0.84 91.4 view view
rs4681440   rs4681440 chr3:149752941 GOOD 0.13 Intronic C/T   0.59 100 view view
rs2640543   rs2640543 chr3:149753278 GOOD 0.37 Intronic A/G   1 100 view view
rs4681443   rs4681443 chr3:149753378 GOOD 0.14 Intronic A/G   0.57 98.9 view view
rs4681444   rs4681444 chr3:149753483 GOOD 0.13 Intronic A/C   0.59 100 view view
rs3772625   rs3772625 chr3:149753641 GOOD 0.07 Intronic A/G   0.99 78.5 view view
rs1492103   rs1492103 chr3:149753873 GOOD 0.23 Intronic A/G   0.81 98.9 view view
rs1492102   rs1492102 chr3:149753909 GOOD 0.11 Intronic C/T   0.83 80.6 view view
rs382822   rs382822 chr3:149754218 MONO   Intronic C/G   0.91 98.9 view view
rs1492101   rs1492101 chr3:149754262 GOOD 0.13 Intronic A/G   0.73 94.6 view view
rs7643533   rs7643533 chr3:149755317 MONO   Intronic A/G   1 100 view view
hCV3187743   rs4681445 chr3:149755596 GOOD 0.14 Intronic C/T   0.57 97.8 view view
rs1388668   rs1388668 chr3:149755740 MONO   Intronic C/T   0.91 95.9 view view
hCV3187744   rs7623953 chr3:149755893 GOOD 0.12 Intronic A/G   0.67 97.8 view view
rs1388666   rs1388666 chr3:149755970 MONO   Intronic A/G   0.92 81.7 view view
rs718858   rs718858 chr3:149756421 GOOD 0.14 Intronic C/T   0.57 97.8 view view
hCV2950427   rs3772622 chr3:149756662 GOOD 0.40 Intronic C/T   1 93.5 view view
rs909383   rs909383 chr3:149757115 GOOD 0.18 Intronic C/T 1 0.92 94.6 view view
hCV3187745   rs3772620 chr3:149757217 GOOD 0.15 Intronic C/T   0.23 95.7 view view
rs1492100   rs1492100 chr3:149758336 GOOD 0.13 Intronic A/T   0.44 95.7 view view
rs1492098   rs1492098 chr3:149758442 GOOD 0.14 Intronic A/G   0.98 91.4 view view
rs1492097   rs1492097 chr3:149758598 GOOD 0.09 Intronic A/G   0.15 82.8 view view
rs275655   rs275655 chr3:149758982 MONO   Intronic C/T   0.91 98.9 view view
hCV3187747   rs3772616 chr3:149759100 GOOD 0.14 Intronic C/T   0.56 97.8 view view
rs1532261   rs1532261 chr3:149759414 MONO   Intronic G/T   0.91 95.7 view view
rs7625758   rs7625758 chr3:149759568 MONO   Intronic C/T   1 81.7 view view
hCV11812724   rs7427804 chr3:149760512 GOOD 0.12 Intronic C/T   0.34 83.9 view view
hCV3187749   rs7427876 chr3:149760697 GOOD 0.14 Intronic A/G   0.54 98.9 view view
rs2675512   rs2675512 chr3:149763859 MONO   Intronic A/C   0.91 86.3 view view
rs6763483   rs6763483 chr3:149764369 MONO   Intronic A/G   1 100 view view
rs2639382   rs2639382 chr3:149764869 MONO   Intronic C/T   0.92 84.3 view view
rs379600   rs379600 chr3:149765394 GOOD 0.04 Intronic G/A   0.96 96.8 view view
rs1826361   rs1826361 chr3:149765637 MONO   Intronic A/C   0.91 90.7 view view
rs2675511   rs2675511 chr3:149766527 GOOD 0.19 Intronic A/G   1 84.9 view view
rs389566   rs389566 chr3:149767291 GOOD 0.23 Intronic A/T   0.94 90.3 view view
rs388915   rs388915 chr3:149768665 GOOD 0.25 Intronic A/G   0.98 97.8 view view
rs2638355   rs2638355 chr3:149769985 GOOD 0.23 Intronic C/T   1 100 view view
rs385338   rs385338 chr3:149770065 GOOD 0.22 Intronic G/C   0.99 93.5 view view
hCV1202365     chr3:149770607 GOOD 0.05 Intronic A/C   1 83.9 view view
rs3772615   rs3772615 chr3:149773502 GOOD 0.04 Intronic G/A   1 100 view view
rs3772613   rs3772613 chr3:149773618 GOOD 0.05 Intronic C/T   1 100 view view
rs3772612   rs3772612 chr3:149773771 GOOD 0.05 Intronic A/C   1 98.9 view view
rs3772611   rs3772611 chr3:149773809 GOOD 0.05 Intronic C/G   1 100 view view
hCV11812731     chr3:149773927 GOOD 0.05 Intronic C/G   1 98.9 view view
rs275649 rs876959 rs275649 chr3:149774235 GOOD 0.20 Intronic G/A   0.98 94.6 view view
rs750178   rs750178 chr3:149774798 MONO   Intronic A/G   0.92 90.3 view view
hCV3134766   rs7630821 chr3:149775386 GOOD 0.06 Intronic C/T   1 97.8 view view
rs3772609   rs3772609 chr3:149775462 GOOD 0.05 Intronic A/C   1 98.9 view view
rs3772608   rs3772608 chr3:149775583 GOOD 0.05 Intronic A/G   1 100 view view
hCV3187718     chr3:149775727 GOOD 0.05 Intronic C/G   1 94.6 view view
rs6801836   rs6801836 chr3:149776446 GOOD 0.19 Intronic C/T   0.4 100 view view
rs7615150   rs7615150 chr3:149777624 MONO   Intronic A/T   1 98.9 view view
rs188016   rs188016 chr3:149778522 MONO   Intronic T/G   0.91 89.2 view view
rs1800766   rs1800766 chr3:149778551 GOOD 0.19 Intronic C/T   0.82 94.6 view view
rs421675   rs421675 chr3:149778593 GOOD 0.01 Intronic T/G   1 97.8 view view
rs418061   rs418061 chr3:149778631 GOOD 0.01 Intronic T/G   1 78.5 view view
rs172103   rs172103 chr3:149778677 MONO   Intronic C/T   0.91 95.7 view view
G2409a2   rs5182 chr3:149780304 GOOD 0.48 Silent T/C 1 0.72 92.5 view view
rs1064532   rs1064532 chr3:149780586 GOOD 0.01 Silent T/C 1 0.91 94.6 view view
rs1064533   rs1064533 chr3:149780598 MONO   Missense T/G   0.92 89.2 view view
rs1064534   rs1064534 chr3:149780631 MONO   Silent T/G   0.91 97.8 view view
rs1064535   rs1064535 chr3:149780649 GOOD 0.01 Silent G/A   1 86 view view
rs1064537   rs1064537 chr3:149780700 GOOD 0.01 Silent A/G   1 90.3 view view
rs1801021   rs1801021 chr3:149780737 GOOD 0.01 Missense A/C   1 96.8 view view
rs5184   rs5184 chr3:149780813 MONO   3' UTR A/G   0.92 89.2 view view
rs5185   rs5185 chr3:149780881 GOOD 0.01 3' UTR T/G   1 97.8 view view
G2409e6 hCV3187716 rs5186 chr3:149780897 GOOD 0.33 3' UTR A/C 1 0.87 92.5 view view
rs5187   rs5187 chr3:149780904 GOOD 0.01 3' UTR A/G   1 93.5 view view
rs5188   rs5188 chr3:149781128 GOOD 0.01 3' UTR G/A   1 97.8 view view
rs5189   rs5189 chr3:149781248 GOOD 0.01 3' UTR G/T   1 92.5 view view
rs440881   rs440881 chr3:149781376 GOOD 0.01 3' UTR A/C   1 97.8 view view
rs1051649   rs1051649 chr3:149781491 MONO   3' UTR T/C   0.91 94.6 view view
hCV3187715   rs380400 chr3:149781609 GOOD 0.05 3' UTR a/g   0.97 76.3 view view
rs6791522   rs6791522 chr3:149782446 MONO   3' of transcribed region C/T   1 100 view view
rs275647   rs275647 chr3:149783250 MONO   3' of transcribed region A/T   0.91 89.2 view view
rs2055049   rs2055049 chr3:149784191 GOOD 0.14 3' of transcribed region A/T   0.69 89.2 view view
rs275646   rs275646 chr3:149784431 GOOD 0.02 3' of transcribed region C/T   0.99 88.2 view view
rs275645   rs275645 chr3:149785363 GOOD 0.42 3' of transcribed region A/G   0.67 95.7 view view
rs2172348   rs2172348 chr3:149785771 MONO   3' of transcribed region A/T   0.91 91.2 view view
rs275643   rs275643 chr3:149786513 GOOD 0.06 3' of transcribed region A/G   0.99 78.5 view view
rs172102   rs172102 chr3:149787244 GOOD 0.50 3' of transcribed region A/G   0.12 92.5 view view
rs427832   rs427832 chr3:149787272 GOOD 0.50 3' of transcribed region A/G   0.11 93.5 view view
hCV26916176     chr3:149788957 GOOD 0.30 3' of transcribed region A/C   0.61 86 view view
rs2261948   rs2261948 chr3:149789027 GOOD 0.04 3' of transcribed region A/T   0.93 87.6 view view
rs2261950   rs2261950 chr3:149789174 GOOD 0.36 3' of transcribed region C/G   0.9 93.5 view view
hCV3134761     chr3:149789655 GOOD 0.31 3' of transcribed region A/G   0.72 97.8 view view
rs2675513   rs2675513 chr3:149790536 GOOD 0.02 3' of transcribed region G/T   0.99 86.3 view view
rs2638356   rs2638356 chr3:149790854 MONO   3' of transcribed region C/T   0.91 87.3 view view

Download a spreadsheet containing this information for all CardioGenomics SNPs that have undergone genotyping:

Page last modified September 14, 2005.

Project 5 > SNP Discovery and Genotyping > Candidate Gene List > AGTR1 Main Page > SNPs Genotyped in AGTR1